Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs2510055 chr11:77961912 C/T 2.18E-5 501 32.48 30.63 23.57 KM Plot
THCA rs2512519 chr11:77953015 C/T 2.35E-5 499 32.48 30.63 27.3 KM Plot
THCA rs2512520 chr11:77954001 G/A 2.36E-5 500 32.48 30.63 27.3 KM Plot
THCA rs2512545 chr11:77957120 C/T 2.36E-5 500 32.48 30.63 27.3 KM Plot
THCA rs2540411 chr7:32773582 A/G 0.000102 496 31.43 32.9 31.97 KM Plot
THCA rs2577766 chr2:86298351 A/G 1.11E-5 496 17.77 29.62 32.27 KM Plot
THCA rs2604050 chr12:31753191 G/A 5.33E-6 497 31.7 31.43 17.13 KM Plot
THCA rs2617186 chr12:31750910 C/T 6.25E-6 500 31.7 31.58 17.13 KM Plot
THCA rs2617187 chr12:31751360 C/T 6.36E-6 498 31.7 31.58 17.13 KM Plot
THCA rs2674808 chr2:86941545 T/C 3.75E-9 499 32.35 27.48 14.73 KM Plot
THCA rs2674826 chr2:86948314 T/C 3.75E-9 499 32.35 27.48 14.73 KM Plot
THCA rs2678681 chr14:20829119 C/T 1.25E-5 493 31.73 31.27 36.03 KM Plot
THCA rs2694841 chr12:49356534 T/C 1.05E-5 499 13.07 32.75 31.57 KM Plot
THCA rs2748447 chr4:3337831 G/A 0.000105 497 27.1 31.7 32.9 KM Plot
THCA rs2749419 chr1:41551441 G/A 1.2E-7 502 27.33 30.43 31.93 KM Plot